Immersion theory
By Sharla A. Stewart
Photography by Dan Dry, Illustration by Allen Carroll
How one Chicago professor teaches biology—and
why it’s a harbinger for science education to come.
Emily
Testa, ’05, has been keeping watch for the past hour.
Her charge, a small glass container half full of a substance that
looks like yellow cough medicine, sits in the arms of a shoe-box-sized
machine called a flask shaker. The machine rocks the container from
side to side until Testa checks the time, pulls on a rubber glove
and a pair of goggles, turns the dial to “OFF,” and
removes the container. She grabs a “pipette man,” which
resembles a turkey baster, and extracts some yellow liquid, dribbling
it into a test tube. Another machine dries the liquid, leaving behind
several milligrams of residue, to which Testa adds a few microliters
from each of three brown bottles: phenyl ethanol, ninhydrin ethanol,
and potassium cyanide pyridine. Five minutes later she checks to
see if the residue is colorless. It’s purple, a sign that
the chemical reaction she was hoping for did not occur. Testa gives
a small “harrumph,” returns the container of yellow
fluid to the flask shaker, and turns the power back on.
“This is all about baby steps,”
she says, stretching out the “all” as if to temper the
expectations of a visitor hoping to witness some sparks-flying Science-with-a-capital-S.
If Stephen J. Kron, associate professor in Molecular
Genetics & Cell Biology, the Committees on Cancer Biology and
Genetics, and the Center for Molecular Oncology, could hear her,
he would flash one of his “see what I mean?” grins.
Kron’s lab is where the container’s contents—if
Testa can achieve the reaction and build a special type of peptide—will
end up, as a substrate to grow mutated strains of yeast. Kron has
known Testa since she was a first-year in his winter quarter AP
5 molecular biology class (as the name implies, a course for students
who scored a 5 on the Advanced Placement biology exam). The following
year she and her cohorts returned to Kron’s AP 5 class as
second-year teaching fellows, and many have since joined his lab.
When she graduates she’ll do what most of those students intend
to do: go on to graduate school in science—in her case, chemistry—and
head for a research career. If Kron’s hunch is right, Testa
and her peers will be among the more creative, persistent graduate
students that their doctoral advisers encounter.
It’s all part of a new way to teach science,
one that plunges students into current research, that trains them
to think and act like scientists from the beginning of their college
experience, that gives them the tools not to be intimidated by complicated
experiments or frustrated by baby steps. Although the course enrolls
only 12 to 20 students annually out of about 115 biological-sciences
concentrators and 113 physical-sciences concentrators in each class
year, at least one major group of research scientists believes an
approach like Kron’s is essential to educating the next generation—perhaps
even recruiting a few students who never believed a research career
was within their reach.
The new way to teach
science can be found in an unassuming tome that costs $23.96,
or it can be read online for free (www.nap.edu/books/0309085357/html).
José Quintáns, associate dean and master of the Biological
Sciences Collegiate Division (BSCD) and professor in pathology and
the College, tends to take a copy with him to meetings with administrators
from the College and Biological and Physical Sciences Divisions,
and to say things like, “Read the book! The book explains
everything!” The book is Bio 2010: Transforming Undergraduate
Education for Future Research Biologists, published this year
by the National Research Council (NRC) of the National Academies.
Quintáns’s goal is to teach all biology majors “a
la Bio 2010—that is, inquiry-based, interdisciplinary
learning.”
The report’s premise is that biological
research has left traditional undergraduate curricula in its dust—not
a good thing, because college is where future researchers develop
their passion. The mapping of the human genome, the digital revolution,
and the blurring of boundaries between the biological, physical,
and mathematical sciences have researchers doing their work in entirely
new ways—witness Chicago’s forthcoming Interdisciplinary
Research Building (IRB), which will house the interdisciplinary
Institute for Biophysical Dynamics (IBD). Yet more often than not,
the NRC says, undergraduates learn biology as a series of facts
set in cement rather than unanswered questions, as experiments to
be replicated in labs rather than analyzed critically, built upon,
or tossed aside. The authors—11 biologists chaired by Stanford’s
Lubert Stryer and including researchers from major public and private
universities, a small college, and a private research institute—call
on undergraduate institutions to rethink their courses and curricula
with an eye toward real-life problems and the excitement of open-ended
inquiry. Undergraduates need mentors, the report says. They need
to work in groups, and they need to be exposed to the stumbling,
fumbling work of research labs. And they need all of this as early
as possible—in their freshman year rather than their junior
or senior year, when their inquisitiveness has calcified from doing
one too many problem sets that inevitably conclude a textbook chapter.
Bio 2010 gives examples of classes
and undergraduate curricula that move beyond the cemented-facts
model. Chicago’s AP 5 course isn’t mentioned, but it
could be. Four years ago Kron began teaching the course, officially
titled Molecular Biology II, with a five-year grant from the National
Science Foundation. The reasoning behind the course was that, as
Quintáns puts it, “giving AP credit is the worst thing
a college can do. By letting those students place out of general-education
requirements in biology, we lost them entirely.” Certainly
many of those students end up majoring in other sciences, but some
avoid the sciences altogether, perhaps because they find college-level
science courses intimidating or they prefer the analytical thinking,
judgment, and discussion skills emphasized in the social sciences
or humanities. In Quintáns’s view those undergrads
who, despite their aptitude, don’t consider themselves science
types could very well turn out to be highly creative researchers.
All College students must complete general-education
requirements in the biological and physical sciences. Nonconcentrators
can take either a two-quarter sequence in each division or a five-quarter
sequence that integrates both. Concentrators must take a five-quarter
fundamental sequence. Kron’s two-quarter AP 5 Fundamental
Sequence replaces either five-quarter general-education sequence.
During winter quarter of their first year the AP 5 students enroll
in Molecular Biology I, a traditional lecture course in which they
learn about DNA, RNA, and proteins; basic methods in molecular biology;
DNA replication, recombination, and transposition; transcription
in cell types; translation; regulation of gene expression; and other
essential topics.
Come spring quarter, they walk into Kron’s
classroom, and he promptly tosses them “into the deep end.”
The class has no syllabus and no text. It meets three days a week,
each week focusing on a different scientific paper recently published
by Chicago biology researchers, following a journal club format
often used in research laboratories. In recent years, for example,
Kron’s students have read “Analysis of a mutant exhibiting
conditional sorting to dense core secretory granules in Tetrahymena
thermophila” by doctoral student Grant R. Bowman and his thesis
adviser, Aaron P. Turkewitz. And there was “Herpes simplex
virus 1-infected cell protein 0 contains two E3 ubiquitin ligase
sites specific for different E2 ubiquitin conjugating enzymes”
by then-doctoral student Ryan Hagglund, SM’01, PhD’03,
and his adviser, Bernard Roizman.
Each week follows the same pattern. On Mondays
two of Kron’s teaching assistants—drawn from the previous
year’s AP 5 students and dubbed Lerman-Neubauer Junior Teaching
Fellows—give a one-hour presentation introducing the paper’s
topic. On Wednesdays one of the paper’s authors visits the
class for a question-and-answer session. Fridays offer the students
their turn to present. Together they dissect the paper’s experiments,
analyze and critique the logic, and expose weaknesses and strengths.
As is de rigueur at actual journal clubs, the students bring food,
usually bagels or doughnuts and orange juice, which Kron underwrites.
For Saturday’s session each student must write an essay the
length of a journal abstract—“because that’s how
science moves these days,” explains Kron.
From the beginning to the end of the course
he grades the first-years as if they were graduate students. “Not
surprisingly, the kids simply fail the first five or six weeks,”
he says. The opening day of class is a pep talk, starting with his
favorite line: “You are already disappointing me.” He
warns them, “Every one of you starts with an F. There is no
way for you to pass—forget about a decent grade—unless
you listen to feedback, work hard, and work together.” (Back
in his office, he says, the second-years complain, “You were
too easy on them! You were so much harder on us!”) Kron is
true to his word—he and his teaching assistants hand out Ds
and Fs with pointed criticisms week after week. The students call
home, they get angry at each other, they get angry at him. “They
spend way too much time on the class,” Kron says. But the
result is that they become fiercely loyal—to him and to each
other—“which is what being in a lab is all about.”
At quarter’s end the class divides into
small groups; each picks a recently published paper, finds the authors
on campus, grills them on their research, and then gives a final
PowerPoint presentation on the work’s merits and kinks. Revised
essays are submitted. Kron grades each student on his or her individual
progress, and he has never had to give a final grade lower than
a B. “You have to let them fail, but you always have to save
them,” he says, echoing the role of a real-world lab chief.
The result is that many students, though certainly not all, become
addicted to science. They get a taste of life in the lab, and they
want more. In the last weeks before summer break, often with help
from Kron or graduate students they have met, many of the students
line up full-time research jobs. If they join his lab, Kron sets
them loose and they learn by “screwing up,” he says,
often making “spectacular discoveries” along the way.
“Undergraduates can make observations that are unexpectedly
good because they are too naive to know not to look.”
Kron’s
own lab works on cell proliferation,
which in practice often means that his students endlessly detail
what happens when one or another amino acid is changed in one or
another key protein that regulates yeast-cell growth. It’s
a perfect example of the interdisciplinarity of current biological
research: Emily Testa, the third-year minding the yellow fluid,
is the only peptide chemist working on this particular project.
Her job is to synthesize peptide substrates for enzymes in cancer
research. Suspended in the yellow liquid are tiny resin beads that
the peptides hook onto when they form; eventually she’ll have
to cleave the peptides off the beads. The technique she’s
using is new, time-consuming, and not foolproof, but if it works
she can slice off the peptides more cleanly and effectively than
if she’d used a more established technique.
It’s been almost two years since
Testa enrolled in Kron’s class, and she’s since taken
lots of classic science courses: organic chemistry, inorganic chemistry,
physical chemistry, some biology and physics. Kron’s class,
she says, was a great experience because “it gave me an idea
of what I’m getting into with a career in research.”
Does she wish her other courses were more like it? “I’m
not foolish enough to think I don’t need book science,”
she replies. Anyway, she adds, “once you get past the introductory
courses,” professors begin to “treat you like graduate
students.”
Quintáns and Kron aren’t
so sure that “book science” and the AP 5 model have
to be mutually exclusive. The Bio 2010 authors clearly
don’t think so. Successful future researchers, they write,
need “not just expertise in the specific biological system
under study, but a conceptual understanding of the science of life
and where a specific research topic fits into the overall picture.”
Nor does the NRC believe that the coursework of disciplines must
remain distinct in the way that Testa has experienced it. “Much
of today’s biomedical research is at the interface between
biology and the physical, mathematical, or information sciences,”
they note. “However, faculty often do not integrate these
subjects into the biology courses they teach,” producing shortsighted
students who “do not see the relevance of their other science
courses to their chosen field of study.” The NRC’s New
Biology Curriculum integrates chemistry, physics, engineering, math,
and computer science early and often.
The College, Quintáns believes,
could learn a lot from Bio 2010. Last spring the BSCD doubled
its capacity of Bio 2010–type courses with Viruses
as Probes of Cellular Function, a lab-based course for 12 AP 5 first-years
taught by pioneering virologist Bernard Roizman, the Joseph Regenstein
distinguished service professor in the Department of Molecular Genetics
& Cell Biology. This year the BSCD introduces a third course,
Developmental Neuroscience, taught by Melina Hale, PhD’98,
assistant professor of organismal biology & anatomy, and a companion
series on biomathematics designed to be integrated with all of the
AP 5 courses.
For his part, Kron dreams of a “molecular
sciences” concentration that would be modeled after the Committee
on Social Thought, erasing disciplinary lines, encouraging debate
and free thinking, with the sink-or-swim spirit of his AP 5 course.
Meanwhile, Quintáns has approached the Physical Sciences
Collegiate Division about beginning to more fully integrate undergraduate
teaching in the same way that the divisions are combining their
work at the graduate and postdoctoral level with the forthcoming
IRB and IBD. He realizes, of course, that it’s all about baby
steps.
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